10d ago
EXTRARNAS: A Framework for Extracting RNA Structures with Multiple Tools
Di Petta · F. · Rosati · P. · Canchari · P. H. · Quadrini · M. · +2 more
Abstract
Accurate annotation of RNA base-pairing interactions is essential for structural analysis, benchmarking, and data-driven RNA structure prediction. Several tools can extract RNA interactions from three-dimensional coordinates, but their outputs are heterogeneous and may disagree, particularly for non-canonical base pairs. We present EXTRARNAS, a Java-based framework for automated, reproducible, and user-friendly large-scale extraction of RNA structural annotations with multiple tools. EXTRARNAS p
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